This commit introduces a new script, `apply_ne_far_call_fixups.py`, which processes internal and import far call fixups from TSV files. The script includes functions to parse addresses, load fixup data, patch internal far calls, and annotate import calls. It handles conflicts in fixup mappings and provides detailed output on the applied patches and any skipped instructions. The script is designed to enhance the handling of NE format far calls in Ghidra.
- Added new commands to the CLI for dumping regions, renaming functions by address, and setting various types of comments.
- Implemented JSON output formatting for CLI commands.
- Introduced functions for decompiling and disassembling functions, as well as retrieving cross-references.
- Enhanced common utilities with functions for reading memory regions, iterating Java items, and managing function metadata.
- Added suppress_output context manager to hide process output during Ghidra startup.
- Updated existing functions to improve error handling and output formatting.
